Submitted by AutomaticAd1918 t3_z67gnl in askscience
New_Concert_4315 t1_iy14l2p wrote
Reply to comment by YouDrink in How exactly does CRISPR-CAS9 insert new genes? by AutomaticAd1918
Doesn't the 5 prime of initial A that gets decapped bind to the 3 prime of the T? If not, why?
corknut1 t1_iy1setu wrote
The initial end is bonded to a "support" (glass beads called cpg are typical) and only cleaved from the support once the entire chain is grown. The cleaving process also caps this end.
Germanofthebored t1_iy1cfcb wrote
Good question - one reason is that the chain isn't flexible enough to make such a tight turn. Still, a free nucleotide building block could hydrogen bond to a growing chain. But that would only be 2 or 3 H bonds, and thus much too weak to stabilize the complex
heresacorrection t1_iy1ez3m wrote
The “cap” only allows 3’ additions OP probably simplified the wording it’s not an actual 5’ cap (as you hear about in mRNA), it’s a chemical blocking done by modifying the 3’ end of the chain. The 5’ is never exposed.
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